NEWS

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BoneProfileR 4.0 (2025-07-07)

• New online version - 4.0 (2025-04-18)

BoneProfileR 3.3

• Main check version to validate outputs - 3.2 (2024-08-24)
• Better check for partial reading - 3.2.1 (2024-12-11)
• Better check tif reading - 3.2.2 (2024-12-12)
• Correct the grid for partial slides - 3.2.3 (2024-12-12)
• New periodic model - 3.2.4 (2024-12-30)
• Big update and bug correction - 3.2.5 (2025-01-02)
• Acceleration of flexit model - 3.2.6 (2025-01-02)
• MCMC for periodic model - 3.2.7 (2025-01-03)
• New options for plot - 3.2.8 (2025-01-10)
• Correct a bug in radial analysis in Windows - 3.2.9 (2025-01-13)
• Numerous checked sections and minor changes to make it more robust - 3.3 (2025-04-18)

BoneProfileR 3.1.1

• Preliminary version 3.0 that uses grayscale gradient - 3.0 (2024-07-21)
• New algoritm to determine the contour of section with very irregular shape (thanks to Stephanie Baumgart to have identified this problem) - 3.0 (2024-08-22)
• New algoritm to determine the radial compactness - 3.0 (2024-08-22)
• New parameter method to generate convex section - 3.1 (2024-08-24)

BoneProfileR 2.5 (2024-04-10)

• Accelerate treatment x30 for center detection and compactness analysis - 2.5 (2024-04-10)
• New references - 2.5 (2024-04-10)
• Correct a rare error that produce non-convergence - 2.5.1 (2024-07-09)
• Correct error in the output of BP_ChooseForeground() - 2.5.2 (2024-04-10)

BoneProfileR 2.4 (2022-09-06)

• New CRAN version - 2.4 (2022-09-06)

BoneProfileR 2.3-3

• New CRAN version - 2.3 (2022-07-14)
• align parameter for html5 is removed - 2.3-3 (2022-08-22)

BoneProfileR 2.2-7

• New CRAN version - 2.2 (2022-04-04)
• Minor change for class management - 2.2-1 (2022-04-20)
• Update to use HelpersMG 5.3-1 - 2.2-5 (2022-05-02)
• Correct a bug in shiny package - 2.2-6 (2022-05-06)

BoneProfileR 2.1-1

• New CRAN version - 2.1 (2022-03-04)
• Check update at startup 2.1-2 (2022-04-02)

BoneProfileR 2.0-7

• First CRAN version - 2.0 (2021-10-05)
• Can fit bone section with very large K1 or K2 values in flexit model - 2.0-1 (2021-10-12)
• Minor change for figures in documentation - 2.0-2 (2022-02-17)
• New option for plot: colors to show histogram of colors - 2.0-3 (2022-02-24)
• Bug in BP_ChooseBackground() is corrected - 2.0-3 (2022-02-24)
• New url to update the package before to be uploaded to CRAN - 2.0-5 (2022-03-03)
• Minor change in documentation - 2.0-6 (2022-03-03)
• New option for plot: 3Dcolors to show 3D graph of colors - 2.0-8 (2022-03-04) CHANGES IN VERSIONS 1.x (2020-04-01 to 2021-01-06)
• The report include the global compacity - 1.0.2 (2020-04-01)
• Use the new Results managment from HelpersMG - 1.1 (2020-04-20)
• New functions BP_GetFittedParameters(), BP_ListAnalyses() - 1.2 (2020-04-22)
• New parameter rotation.angle in BP_EstimateCompactness() - 1.2 (2020-04-23)
• Can use pacakges ijtiff - 1.3 (2020-05-01)
• Use the results manager of HelpersMG - 1.4 (2020-06-01)
• Solve a problem with ijtiff - 1.4.1 (2020-06-08)
• Solve a problem with BP_report - 1.4.1 (2020-06-08)
• BP_report reports the observed and modeled compactness - 1.4.2 (2020-06-08)
• BP_report reports modeled compactness for radial analysis - 1.4.3 (2020-06-09)
• BP_AutoFit to simplify the analysis - 1.4.4 (2020-06-10)
• BP_report reports modeled compactness for radial analysis - 1.4.5 (2020-06-15)
• BP_LnLCompactness is less sensitive to strange data - 1.4.6 (2020-06-17)
• BP_Report report both global compactness by ML and MCMC - 1.4.7 (2020-06-19)
• Tentative to introduce the ontogenic center - 1.4.8 (2020-06-20)
• Shiny application BP - 1.4.9 & 1.4.10 (2020-06-20)
• Use of constrainted fit rater than logit for Min and Max - 1.5 (2020-09-05)
• Web version uses a 2-step fit - 1.5 (2020-09-05)
• Parallel version for radial estimate - 1.6 (2020-09-06)
• 2-steps fit is available for Web and GUI version - 1.6.1 (2020-09-07)
• Bug in Web version - 1.6.2 (2020-09-14)
• plot can plot the model or observation for only one angle - 1.6.3 (2020-09-16)
• axis changed when radial plot is used - 1.6.4 (2020-09-18)
• Correct a bug related to the way R 4.0 handled [ - 1.6.5 (2021-01-06)
• type can be mcmc from plot - 2.0 (2021-09-20) CHANGES IN VERSIONS <1 (2020-02-21)
• New package BoneProfileR - 0.1
• First version for test - 0.2
• New function BP_Report() - 0.3
• Polishing - 0.4
• Confidence interval using Hessian matrix is implemented - 0.5
• The mcmc analysis is stored within an analysis - 0.5
• Add the xlsx report - 0.6
• Add a timestamp for the analyses - 0.7
• Correct the estimate of distance to the peripherie - 0.8
• Analysis of partial section - 0.9
• First complete version for tests - 1