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      ],
      "rows": 173,
      "table": true,
      "tojson": true
    },
    {
      "name": "tempConst",
      "title": "Timeseries of constant temperatures for nests",
      "object": "tempConst",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Time",
        "T25",
        "T26",
        "T27",
        "T28",
        "T29",
        "T30",
        "T31",
        "T32",
        "T33",
        "T34",
        "T35"
      ],
      "rows": 1113,
      "table": true,
      "tojson": true
    },
    {
      "name": "TSP.list",
      "title": "Database of thermosensitive period of development for sex determination",
      "object": "TSP.list",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "embryogrowth-package",
      "title": "The package embryogrowth",
      "topics": [
        "embryogrowth-package"
      ]
    },
    {
      "page": "calibrate.datalogger",
      "title": "Calibrate data loggers and correct time series of temperatures",
      "concept": [
        "Data loggers utilities"
      ],
      "topics": [
        "calibrate.datalogger"
      ]
    },
    {
      "page": "ChangeSSM",
      "title": "Generate set of parameters for different forms of thermal norm of reaction",
      "topics": [
        "ChangeSSM"
      ]
    },
    {
      "page": "DatabaseNestingArea",
      "title": "Database of RMU for marine turtles",
      "topics": [
        "DatabaseNestingArea"
      ]
    },
    {
      "page": "DatabaseTSD",
      "title": "Database of TSD information for reptiles",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "DatabaseTSD"
      ]
    },
    {
      "page": "DatabaseTSD.version",
      "title": "Version of database of TSD information for reptiles",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "DatabaseTSD.version"
      ]
    },
    {
      "page": "dydt.exponential",
      "title": "Return the derivative of the exponential function",
      "topics": [
        "dydt.exponential"
      ]
    },
    {
      "page": "dydt.Gompertz",
      "title": "Return the derivative of the Gompertz function",
      "topics": [
        "dydt.Gompertz"
      ]
    },
    {
      "page": "dydt.linear",
      "title": "Return the derivative of the linear function",
      "topics": [
        "dydt.linear"
      ]
    },
    {
      "page": "FormatNests",
      "title": "Create a dataset of class Nests to be used with searchR",
      "topics": [
        "FormatNests"
      ]
    },
    {
      "page": "Generate_hatchling_metric",
      "title": "Generate a data.frame that can be used as hatchling.metric value for searchR()",
      "topics": [
        "Generate_hatchling_metric"
      ]
    },
    {
      "page": "GenerateAnchor",
      "title": "Generate a set of anchored parameters",
      "topics": [
        "GenerateAnchor"
      ]
    },
    {
      "page": "GenerateConstInc",
      "title": "Generate a data.frame with constant incubation temperature and incubation duration",
      "topics": [
        "GenerateConstInc"
      ]
    },
    {
      "page": "GRTRN_MHmcmc",
      "title": "Metropolis-Hastings algorithm for Embryo Growth Rate Thermal Reaction Norm",
      "topics": [
        "GRTRN_MHmcmc"
      ]
    },
    {
      "page": "HatchingSuccess.fit",
      "title": "Fit a hatching success model to data using maximum likelihood",
      "concept": [
        "Hatching success"
      ],
      "topics": [
        "HatchingSuccess.fit"
      ]
    },
    {
      "page": "HatchingSuccess.lnL",
      "title": "Return -log likelihood of the data and the parameters",
      "concept": [
        "Hatching success"
      ],
      "topics": [
        "HatchingSuccess.lnL"
      ]
    },
    {
      "page": "HatchingSuccess.MHmcmc",
      "title": "Metropolis-Hastings algorithm for hatching success",
      "concept": [
        "Hatching success"
      ],
      "topics": [
        "HatchingSuccess.MHmcmc"
      ]
    },
    {
      "page": "HatchingSuccess.MHmcmc_p",
      "title": "Generates set of parameters to be used with HatchingSuccess.MHmcmc()",
      "concept": [
        "Hatching success"
      ],
      "topics": [
        "HatchingSuccess.MHmcmc_p"
      ]
    },
    {
      "page": "HatchingSuccess.model",
      "title": "Return the hatching success according the set of parameters and temperatures",
      "concept": [
        "Hatching success"
      ],
      "topics": [
        "HatchingSuccess.model"
      ]
    },
    {
      "page": "HeterogeneityNests",
      "title": "Model heterogeneity of temperatures.",
      "topics": [
        "HeterogeneityNests"
      ]
    },
    {
      "page": "hist.Nests2",
      "title": "Show the histogram of temperatures with set of nests",
      "topics": [
        "hist.Nests2"
      ]
    },
    {
      "page": "hist.NestsResult",
      "title": "Show the histogram of temperatures with set of nests",
      "topics": [
        "hist.NestsResult"
      ]
    },
    {
      "page": "info.nests",
      "title": "Calculte statistics about nests",
      "topics": [
        "info.nests"
      ]
    },
    {
      "page": "integral.exponential",
      "title": "Return the derivative of the exponential function",
      "topics": [
        "integral.exponential"
      ]
    },
    {
      "page": "integral.Gompertz",
      "title": "Return the result of the Gompertz function",
      "topics": [
        "integral.Gompertz"
      ]
    },
    {
      "page": "integral.linear",
      "title": "Return the linear function",
      "topics": [
        "integral.linear"
      ]
    },
    {
      "page": "likelihoodR",
      "title": "Estimate the likelihood of a set of parameters for nest incubation data",
      "topics": [
        "likelihoodR"
      ]
    },
    {
      "page": "logLik.HatchingSuccess",
      "title": "Return -log L of a fit",
      "concept": [
        "Hatching success"
      ],
      "topics": [
        "logLik.HatchingSuccess"
      ]
    },
    {
      "page": "logLik.NestsResult",
      "title": "Return Log Likelihood of a fit generated by searchR",
      "topics": [
        "logLik.NestsResult"
      ]
    },
    {
      "page": "logLik.STRN",
      "title": "Return Log Likelihood of a fit generated by STRN",
      "topics": [
        "logLik.STRN"
      ]
    },
    {
      "page": "logLik.tsd",
      "title": "Return Log Likelihood of a fit generated by tsd",
      "topics": [
        "logLik.tsd"
      ]
    },
    {
      "page": "movement",
      "title": "Analyze movement recorded within a nest with an accelerometer datalogger",
      "concept": [
        "Data loggers utilities"
      ],
      "topics": [
        "movement"
      ]
    },
    {
      "page": "MovingIncubation",
      "title": "Simulate incubation of a nest with the beginning of incubation varying",
      "topics": [
        "MovingIncubation"
      ]
    },
    {
      "page": "nest",
      "title": "Timeseries of temperatures for nests",
      "topics": [
        "nest"
      ]
    },
    {
      "page": "nobs.HatchingSuccess",
      "title": "Return number of observations of a fit",
      "concept": [
        "Hatching success"
      ],
      "topics": [
        "nobs.HatchingSuccess"
      ]
    },
    {
      "page": "nobs.NestsResult",
      "title": "Return number of observations of a fit",
      "topics": [
        "nobs.NestsResult"
      ]
    },
    {
      "page": "P_TRT",
      "title": "Estimate the transitional range of temperatures based on a set of parameters",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "P_TRT"
      ]
    },
    {
      "page": "plot_transition",
      "title": "Show fonction used for transition",
      "topics": [
        "plot_transition"
      ]
    },
    {
      "page": "plot.HatchingSuccess",
      "title": "Plot results of HatchingSuccess.fit() that best describe hatching success",
      "topics": [
        "plot.HatchingSuccess"
      ]
    },
    {
      "page": "plot.Nests2",
      "title": "Show the plot of temperatures with set of nests",
      "topics": [
        "plot.Nests2"
      ]
    },
    {
      "page": "plot.NestsResult",
      "title": "Plot the embryo growth",
      "topics": [
        "plot.NestsResult"
      ]
    },
    {
      "page": "plot.tsd",
      "title": "Plot results of tsd() that best describe temperature-dependent sex determination",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "plot.tsd"
      ]
    },
    {
      "page": "plotR",
      "title": "Plot the fitted growth rate dependent on temperature and its density",
      "topics": [
        "plotR"
      ]
    },
    {
      "page": "predict.HatchingSuccess",
      "title": "Return prediction based on a model fitted with HatchingSuccess.fit()",
      "concept": [
        "Hatching success"
      ],
      "topics": [
        "predict.HatchingSuccess"
      ]
    },
    {
      "page": "predict.tsd",
      "title": "Estimate sex ratio according to constant incubation temperature",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "predict.tsd"
      ]
    },
    {
      "page": "resultNest_3p_Dallwitz",
      "title": "Fit using the nest database",
      "topics": [
        "resultNest_3p_Dallwitz"
      ]
    },
    {
      "page": "resultNest_3p_Weibull",
      "title": "Result of the fit using the nest database using Weibull function",
      "topics": [
        "resultNest_3p_Weibull"
      ]
    },
    {
      "page": "resultNest_4p_normal",
      "title": "Result of the fit using the nest database using asymmetric normal function",
      "topics": [
        "resultNest_4p_normal"
      ]
    },
    {
      "page": "resultNest_4p_SSM",
      "title": "Fit using the nest database",
      "topics": [
        "resultNest_4p_SSM"
      ]
    },
    {
      "page": "resultNest_4p_SSM_Linear",
      "title": "Fit using the nest database",
      "topics": [
        "resultNest_4p_SSM_Linear"
      ]
    },
    {
      "page": "resultNest_4p_transition",
      "title": "Result of the fit using the nest database using transition",
      "topics": [
        "resultNest_4p_transition"
      ]
    },
    {
      "page": "resultNest_4p_trigo",
      "title": "Result of the fit using the nest database using trigonometric function",
      "topics": [
        "resultNest_4p_trigo"
      ]
    },
    {
      "page": "resultNest_4p_weight",
      "title": "Fit using the nest database with weight",
      "topics": [
        "resultNest_4p_weight"
      ]
    },
    {
      "page": "resultNest_5p_Dallwitz",
      "title": "Fit using the nest database",
      "topics": [
        "resultNest_5p_Dallwitz"
      ]
    },
    {
      "page": "resultNest_6p_SSM",
      "title": "Fit using the nest database",
      "topics": [
        "resultNest_6p_SSM"
      ]
    },
    {
      "page": "resultNest_mcmc_4p_SSM",
      "title": "Result of the mcmc using the nest database",
      "topics": [
        "resultNest_mcmc_4p_SSM"
      ]
    },
    {
      "page": "resultNest_mcmc_4p_SSM_Linear",
      "title": "Result of the mcmc using the nest database",
      "topics": [
        "resultNest_mcmc_4p_SSM_Linear"
      ]
    },
    {
      "page": "resultNest_mcmc_6p_SSM",
      "title": "Result of the mcmc using the nest database",
      "topics": [
        "resultNest_mcmc_6p_SSM"
      ]
    },
    {
      "page": "resultNest_mcmc_newp",
      "title": "Result of the mcmc using the nest database with anchored parameters",
      "topics": [
        "resultNest_mcmc_newp"
      ]
    },
    {
      "page": "resultNest_newp",
      "title": "Fit using the nest database with anchored parameters",
      "topics": [
        "resultNest_newp"
      ]
    },
    {
      "page": "ROSIE",
      "title": "Database of TSD information for turtles",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "ROSIE"
      ]
    },
    {
      "page": "ROSIE.version",
      "title": "Version of database of TSD information for reptiles",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "ROSIE.version"
      ]
    },
    {
      "page": "searchR",
      "title": "Fit the parameters that best represent nest incubation data.",
      "topics": [
        "searchR"
      ]
    },
    {
      "page": "stages",
      "title": "Database of of embryonic development and thermosensitive period of development for sex determination",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "stages"
      ]
    },
    {
      "page": "STRN",
      "title": "Estimate the parameters that best describe the sexualisation thermal reaction norm within the TSP",
      "topics": [
        "STRN"
      ]
    },
    {
      "page": "STRN_MHmcmc",
      "title": "Metropolis-Hastings algorithm for Sexualisation Thermal Reaction Norm",
      "topics": [
        "STRN_MHmcmc"
      ]
    },
    {
      "page": "summary.Nests2",
      "title": "Summarize the information from a Nests object.",
      "topics": [
        "summary.Nests2"
      ]
    },
    {
      "page": "switch.transition",
      "title": "Add a transition parameter on a set of parameters or remove it",
      "topics": [
        "switch.transition"
      ]
    },
    {
      "page": "tempConst",
      "title": "Timeseries of constant temperatures for nests",
      "topics": [
        "tempConst"
      ]
    },
    {
      "page": "test.parallel",
      "title": "Estimate the likelihood of a set of parameters for nest incubation data with or without parallel computing option",
      "topics": [
        "test.parallel"
      ]
    },
    {
      "page": "TRN_MHmcmc_p",
      "title": "Generates set of parameters to be used with GRTRN_MHmcmc() or STRN_MHmcmc()",
      "topics": [
        "TRN_MHmcmc_p"
      ]
    },
    {
      "page": "tsd",
      "title": "Estimate the parameters that best describe temperature-dependent sex determination",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "tsd"
      ]
    },
    {
      "page": "tsd_MHmcmc",
      "title": "Metropolis-Hastings algorithm for Sex ratio",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "tsd_MHmcmc"
      ]
    },
    {
      "page": "tsd_MHmcmc_p",
      "title": "Generates set of parameters to be used with tsd_MHmcmc()",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "tsd_MHmcmc_p"
      ]
    },
    {
      "page": "TSP.list",
      "title": "Database of thermosensitive period of development for sex determination",
      "concept": [
        "Functions for temperature-dependent sex determination"
      ],
      "topics": [
        "TSP.list"
      ]
    },
    {
      "page": "uncertainty.datalogger",
      "title": "Uncertainty of average temperatures obtained using temperature data logger",
      "concept": [
        "Data loggers utilities"
      ],
      "topics": [
        "uncertainty.datalogger"
      ]
    },
    {
      "page": "UpdateNests",
      "title": "Create a dataset of class Nests2 from an object of class Nests",
      "topics": [
        "UpdateNests"
      ]
    },
    {
      "page": "web.tsd",
      "title": "Run a shiny application for basic functions of tsd function",
      "topics": [
        "web.tsd"
      ]
    },
    {
      "page": "weightmaxentropy",
      "title": "Search for the weights of the nests which maximize the entropy of nest temperatures distribution",
      "topics": [
        "weightmaxentropy"
      ]
    }
  ],
  "_rundeps": [
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  "_score": 2.9324737646771535,
  "_indexed": true,
  "_nocasepkg": "embryogrowth",
  "_universes": [
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